scRNA Ferret Developing Cortex E34 - P1
scRNA Ferret Developing Cortex E34 - P1
Cell information vs gene expression on reduced dimensions
In this tab, users can visualise both cell information and gene expression side-by-side on low-dimensional representions.Dimension Reduction
Cell information
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(Larger plots give smaller fonts and dots)
Cell numbers / statistics
Cell information vs cell information on dimension reduction
In this tab, users can visualise two cell informations side-by-side on low-dimensional representions.Dimension Reduction
Gene expression vs gene expression on dimension reduction
In this tab, users can visualise two gene expressions side-by-side on low-dimensional representions.Dimension Reduction
Coexpression of two genes on reduced dimensions
In this tab, users can visualise the coexpression of two genes on low-dimensional representions.Dimension Reduction
Gene Expression
Cell information / gene expression violin plot / box plot
In this tab, users can visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).Proportion / cell numbers across different cell information
In this tab, users can visualise the composition of single cells based on one discrete cell information across another discrete cell information. Usage examples include the library or cellcycle composition across clusters.Gene expression bubbleplot / heatmap
In this tab, users can visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster).The normalised expression are averaged, log-transformed and then plotted.
Single gene expression bubbleplot / heatmap
In this tab, users can visualise the gene expression patterns of a SINGLE gene grouped by categorical cell information (e.g. library / cluster).The normalised expression are averaged, log-transformed and then plotted.
Cell information vs gene expression on reduced dimensions
In this tab, users can visualise both cell information and gene expression side-by-side on low-dimensional representions.Dimension Reduction
Cell information
(Larger plots give smaller fonts and dots)
Cell numbers / statistics
Cell information vs cell information on dimension reduction
In this tab, users can visualise two cell informations side-by-side on low-dimensional representions.Dimension Reduction
Gene expression vs gene expression on dimension reduction
In this tab, users can visualise two gene expressions side-by-side on low-dimensional representions.Dimension Reduction
Coexpression of two genes on reduced dimensions
In this tab, users can visualise the coexpression of two genes on low-dimensional representions.Dimension Reduction
Gene Expression
Cell information / gene expression violin plot / box plot
In this tab, users can visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).Proportion / cell numbers across different cell information
In this tab, users can visualise the composition of single cells based on one discrete cell information across another discrete cell information. Usage examples include the library or cellcycle composition across clusters.Gene expression bubbleplot / heatmap
In this tab, users can visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster).The normalised expression are averaged, log-transformed and then plotted.
Single gene expression bubbleplot / heatmap
In this tab, users can visualise the gene expression patterns of a SINGLE gene grouped by categorical cell information (e.g. library / cluster).The normalised expression are averaged, log-transformed and then plotted.
Cell information vs gene expression on reduced dimensions
In this tab, users can visualise both cell information and gene expression side-by-side on low-dimensional representions.Dimension Reduction
Cell information
(Larger plots give smaller fonts and dots)
Cell numbers / statistics
Cell information vs cell information on dimension reduction
In this tab, users can visualise two cell informations side-by-side on low-dimensional representions.Dimension Reduction
Gene expression vs gene expression on dimension reduction
In this tab, users can visualise two gene expressions side-by-side on low-dimensional representions.Dimension Reduction
Coexpression of two genes on reduced dimensions
In this tab, users can visualise the coexpression of two genes on low-dimensional representions.Dimension Reduction
Gene Expression
Cell information / gene expression violin plot / box plot
In this tab, users can visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).Proportion / cell numbers across different cell information
In this tab, users can visualise the composition of single cells based on one discrete cell information across another discrete cell information. Usage examples include the library or cellcycle composition across clusters.Gene expression bubbleplot / heatmap
In this tab, users can visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster).The normalised expression are averaged, log-transformed and then plotted.
Single gene expression bubbleplot / heatmap
In this tab, users can visualise the gene expression patterns of a SINGLE gene grouped by categorical cell information (e.g. library / cluster).The normalised expression are averaged, log-transformed and then plotted.
Reference: Del-Valle-Antón et al. Science Advances 2024
Developed by Rafael Soler ORCID Linkedin
Modification of the original ShinyCell code